diff --git a/.gitignore b/.gitignore
index 7090f4aa66..4811f15c2b 100644
--- a/.gitignore
+++ b/.gitignore
@@ -141,6 +141,7 @@
 /tools/android
 /tools/clang
 /tools/generate_library_loader
+/tools/generate_stubs
 /tools/gn
 /tools/grit
 /tools/gyp
diff --git a/setup_links.py b/setup_links.py
index 492c38b70e..dc930644a9 100755
--- a/setup_links.py
+++ b/setup_links.py
@@ -66,6 +66,7 @@ DIRECTORIES = [
   'third_party/zlib',
   'tools/clang',
   'tools/generate_library_loader',
+  'tools/generate_stubs',
   'tools/gn',
   'tools/gyp',
   'tools/memory',